POSTECH

교원프로필

교원에 대한 정보를 나타내는 표입니다.
성명	김상욱
소속	생명과학과
전화번호	279-2348
E-mail	sukim@postech.ac.kr
Homepage	http://sbi.postech.ac.kr

학력

1998.09 ~ 2002.08 FLORIDA STATE UNIVERSITY (박사-생물리학)
1994.08 ~ 1996.08 고려대학교 (석사-생명공학)
1988.03 ~ 1992.02 고려대학교 (학사-유전공학)

주요경력

2002.09 ~ 2005.02 : UCLA
1996.10 ~ 1998.06 : 한국과학기술연구원

전문분야

생물정보학, 분자구조학, 단백질 구조예측
세포막 단백질의 구조 기능 연구
네트워크 생물학

펼쳐보기

학술지

국제전문학술지

Capicua restricts cancer stem cell-like properties in breast cancer cells, ONCOGENE, , , - (2020)
Domain-mediated interactions for protein subfamily identification, Scientific Reports, , 10, 264- (2020)
Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites, NUCLEIC ACIDS RESEARCH, , 47, e94- (2019)
Exomic and transcriptomic alterations of hereditary gingival fibromatosis, ORAL DISEASES, , 25, 1374-1383 (2019)
Epigenetic regulation of mammalian Hedgehog signaling to the stroma determines the molecular subtype of bladder cancer, ELIFE, , 8, - (2019)
Tetrahydrobiopterin enhances mitochondrial biogenesis and cardiac contractility via stimulation of PGC1 alpha signaling, BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE, , 1865, - (2019)
Link clustering explains non-central and contextually essential genes in protein interaction networks, SCIENTIFIC REPORTS, , 9, - (2019)
Variants at potential loci associated with Sjogren's syndrome in Koreans: A genetic association study, CLINICAL IMMUNOLOGY, , 207, 79-86 (2019)
KIN-4/MAST kinase promotes PTEN-mediated longevity of Caenorhabditis elegans via binding through a PDZ domain, AGING CELL, , 18, - (2019)
Phylogenetic analysis of ABCG subfamily proteins in plants: functional clustering and coevolution with ABCGs of pathogens, Physiologia Plantarum, , , - (2019)
Capicua suppresses hepatocellular carcinoma progression by controlling ETV4-MMP1 axis, HEPATOLOGY, , 67, 2287-2301 (2018)
Head formation requires Dishevelled degradation that is mediated by March2 in concert with Dapper1, Development (Cambridge), , 145, - (2018)
Divergence of Noncoding Regulatory Elements Explains Gene-Phenotype Differences between Human and Mouse Orthologous Genes, MOLECULAR BIOLOGY AND EVOLUTION, , 35, 1653-1667 (2018)
The mechanistic insight of a specific interaction between 15d-Prostaglandin-J2 and eIF4A suggests an evolutionary conserved role across species, Biology Open, , 7, - (2018)
Genetic analysis of hereditary gingival fibromatosis using whole exome sequencing and bioinformatics, Oral Diseases, , 23, 102-19 (2017)
Genetic alterations in mesiodens as revealed by targeted NGS and gene co-occurrence network analysis, ORAL DISEASES, , 23, 966-972 (2017)
March2 is required for Xenopus head organizer formation by antagonizing Wnt signaling pathway, MECHANISMS OF DEVELOPMENT, , 145, S63-S63 (2017)
Spread of Mutant Middle East Respiratory Syndrome Coronavirus with Reduced Affinity to Human CD26 during the South Korean Outbreak, MBIO, , 7, - (2016)
OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research, Oncotarget, , 7, 56147-56152 (2016)
Genetic analysis of hereditary gingival fibromatosis using whole exome sequencing and bioinformatics, Oral Diseases, , , - (2016)
Constitutive activation of T cells by γ2-herpesviral GPCR through the interaction with cellular CXCR4, Biochimica et Biophysica Acta (BBA) - Molecular Cell Research, , , - (2016)
OASIS 2: online application for survival analysis 2 with features for the analysis of maximal lifespan and healthspan in aging research, ONCOTARGET, , 7, 56147-56152 (2016)
Genetic Investigation of Bisphosphonate-Related Osteonecrosis of Jaw (BRONJ) via Whole Exome Sequencing and Bioinformatics, PLOS ONE, , 10, E0118084- (2015)
Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network, Scientific Reports, , 5, - (2015)
Network Modules of the Cross-Species Genotype-Phenotype Map Reflect the Clinical Severity of Human Diseases, PLOS ONE, , 10, E0136300- (2015)
RNA helicase HEL-1 promotes longevity by specifically activating DAF-16/FOXO transcription factor signaling in Caenorhabditis elegans, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, , 112, E4246-E4255 (2015)
Identification of cancer-type-specific modules comprised of cancer-type-specific variants through phenotype similarity between cancer types, PROTEIN SCIENCE, , 24, 266-266 (2015)
A comprehensive protein domain analysis to map cancer-type-specific somatic mutations, PROTEIN SCIENCE, , 24, 265-266 (2015)
Identification of transient protein complexes by using intrinsic disorder and network topology, PROTEIN SCIENCE, , 24, 258-259 (2015)
Computational Design of Binding Proteins to EGFR Domain II, PLOS ONE, , 9, - (2014)
Predictive combinatorial design of mRNA translation initiation regions for systematic optimization of gene expression levels, SCIENTIFIC REPORTS, , 4, - (2014)
Linear Motif-Mediated Interactions Have Contributed to the Evolution of Modularity in Complex Protein Interaction Networks, PLOS COMPUTATIONAL BIOLOGY, , 10, E1003881- (2014)
Feedback regulation via AMPK and HIF-1 mediates ROS-dependent longevity in Caenorhabditis elegans, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, , 111, E4458-E4467 (2014)
Investigation of Pathogenic Genes in Peri-Implantitis from Implant Clustering Failure Patients: A Whole-Exome Sequencing Pilot Study, PLOS ONE, , 9, - (2014)
Pyrilamine inhibits nicotine-induced catecholamine secretion, NEUROCHEMISTRY INTERNATIONAL, , 74, 42-45 (2014)
Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency, METABOLIC ENGINEERING, , 15, 67-74 (2013)
Discovery of Cellular Proteins Required for the Early Steps of HCV Infection Using Integrative Genomics, PLOS ONE, , 8, - (2013)
Rampant Exchange of the Structure and Function of Extramembrane Domains between Membrane and Water Soluble Proteins, PLOS COMPUTATIONAL BIOLOGY, , 9, E1002997- (2013)
Spatial and functional organization of mitochondrial protein network, SCIENTIFIC REPORTS, , 3, 1403- (2013)
A novel role for Gadd45 alpha in base excision repair: Modulation of APE1 activity by the direct interaction of Gadd45 alpha with PCNA, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, , 434, 185-190 (2013)
Protein design by fusion: implications for protein structure prediction and evolution, Acta Crystallographica Section D, , 69, 2451-2460 (2013)
Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution, PLOS GENETICS, , 8, -E1002510 (2012)
The protein interaction network of extracellular vesicles derived from human colorectal cancer cells, JOURNAL OF PROTEOME RESEARCH, , 11, 1144-1151 (2012)
Role of BI-1 (TEGT)-mediated ERK1/2 activation in mitochondria-mediated apoptosis and splenomegaly in BI-1 transgenic mice, Biochimica et Biophysica Acta - Molecular Cell Research, , 1823, 876-888 (2012)
PDZ Domain-containing 1 (PDZK1) Protein Regulates Phospholipase C-beta 3 (PLC-beta 3)-specific Activation of Somatostatin by Forming a Ternary Complex with PLC-beta 3 and Somatostatin Receptors, JOURNAL OF BIOLOGICAL CHEMISTRY, , 287, 21012-21024 (2012)
Rational Engineering of Enzyme Allosteric Regulation through Sequence Evolution Analysis, PLOS COMPUTATIONAL BIOLOGY, , 8, E1002612-E1002612 (2012)
Network rewiring is an important mechanism of gene essentiality change, SCIENTIFIC REPORTS, , 2, - (2012)
Phenotypic characterization of peripheral T cells and their dynamics in scrub typhus patients, PLOS NEGLECTED TROPICAL DISEASES, , 6, - (2012)
Structural differences between thermophilic and mesophilic membrane proteins, PROTEIN SCIENCE, , 21, 1746-1753 (2012)
Evolutionary history of human disease genes reveals phenotypic connections and comorbidity among genetic diseases, SCIENTIFIC REPORTS, , 2, - (2012)
Both the Hydrophobicity and a Positively Charged Region Flanking the C-Terminal Region of the Transmembrane Domain of Signal-Anchored Proteins Play Critical Roles in Determining Their Targeting, PLANT CELL, , 23, 1588-1607 (2011)
Protein localization as a principal feature of the etiology and comorbidity of genetic diseases, MOLECULAR SYSTEMS BIOLOGY, , 7, - (2011)
Network Clustering Revealed the Systemic Alterations of Mitochondrial Protein Expression, PLOS COMPUTATIONAL BIOLOGY, , 7, - (2011)
OASIS: Online Application for the Survival Analysis of Lifespan Assays Performed in Aging Research, PLOS ONE, , 6, - (2011)
Molecular Evolution of Protein Conformational Changes Revealed by a Network of Evolutionarily Coupled Residues, MOLECULAR BIOLOGY AND EVOLUTION, , 28, 2675-2685 (2011)
A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy, NATURE NANOTECHNOLOGY, , 6, 675-682 (2011)
Global Sequence Homology Detection Using Word Conservation Probability, Interdisciplinary Bio Central, , 3, 1-9 (2011)
A multifunctional core-shell nanoparticle for dendritic cell-based cancer immunotherapy, NATURE NANOTECHNOLOGY, , 6, 675-682 (2011)
Bax Inhibitor 1 Increases Cell Adhesion through Actin Polymerization: Involvement of Calcium and Actin Binding, MOLECULAR AND CELLULAR BIOLOGY, , 30, 1800-1813 (2010)
Global gene expression profile of Orientia tsutsugamushi, PROTEOMICS, , 10, 1699-1715 (2010)
ConPlex: a server for the evolutionary conservation analysis of protein complex structures., NUCLEIC ACIDS RESEARCH, , 38, W450-W456 (2010)
ConPlex: a server for the evolutionary conservation analysis of protein complex structures, NUCLEIC ACIDS RESEARCH, , 38, W450-W456 (2010)
Changes in Hepatic Gene Expression upon Oral Administration of Taurine-Conjugated Ursodeoxycholic Acid in ob/ob Mice, PLOS ONE, , 5, - (2010)
CONSTRUCTION OF FUNCTIONAL INTERACTION NETWORKS THROUGH CONSENSUS LOCALIZATION PREDICTIONS OF THE HUMAN PROTEOME, JOURNAL OF PROTEOME RESEARCH, , 8, 3367-3376 (2009)
Integration of Evolutionary Features for the Identification of Functionally Important Residues in Major Facilitator Superfamily Transporters, PLOS COMPUTATIONAL BIOLOGY, , 5, E1000522-E1000522 (2009)
Evolutionary conservation in multiple faces of protein interaction, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, , 77, 14-25 (2009)
Bioinformatic approaches for the structure and function of membrane proteins, BMB REPORTS, , 42, 697-704 (2009)
Dimerization of the transmembrane domain of amyloid precursor proteins and familial Alzheimer's disease mutants, BMC NEUROSCIENCE, , 9, - (2008)
Common occurrence of internal repeat symmetry in membrane proteins, PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, , 71, 68-80 (2008)
Transmembrane helix uniformity examined by spectral mapping of torsion angles, STRUCTURE, , 16, 787-797 (2008)
Functional analysis of dicer-2 missense mutations in the siRNA pathway of Drosophila, BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS, , 371, 525-530 (2008)
Expression of the novel wheat gene TM20 confers enhanced cadmium tolerance to bakers' yeast, JOURNAL OF BIOLOGICAL CHEMISTRY, , 283, 15893-15902 (2008)
Bax inhibitor-1 is a pH-dependent regulator of Ca2+ channel activity in the endoplasmic reticulum, JOURNAL OF BIOLOGICAL CHEMISTRY, , 283, 15946-15955 (2008)
Genome-based construction of the metabolic pathways of Orientia tsutsugamushi and comparative analysis within the Rickettsiales order, COMPARATIVE AND FUNCTIONAL GENOMICS, , , - (2008)
Arabidopsis nuclear-encoded plastid transit peptides contain multiple sequence subgroups with distinctive chloroplast-targeting sequence motifs, PLANT CELL, , 20, 1603-1622 (2008)
Role of Amphipathic Helix of a Herpesviral Protein in Membrane Deformation and T Cell Receptor Downregulation, PLOS PATHOGENS, , 4, - (2008)
THE SYNTHESIS AND HYDRAULIC PROPERTIES OF CALCIUM SULFO ALUMINATE(CSA) DERIVED FROM SECONDARY REFINING SLAG, JOURNAL OF THE KOREAN INSTITUTE OF METALS AND MATERIALS, , 46, 437-442 (2008)
Janus model of the Na,K-ATPase beta-subunit transmembrane domain: Distinct faces mediate alpha/beta assembly and beta-beta homo-oligomerization, JOURNAL OF MOLECULAR BIOLOGY, , 365, 706-714 (2007)
Engineering a de novo internal disulfide bridge to improve the thermal stability of xylanase from Bacillus stearothermophilus No. 236, JOURNAL OF BIOTECHNOLOGY, , 127, 300-309 (2007)
Association and functional relevance of E237G, a polymorphism of the high-affinity immunoglobulin E-receptor beta chain gene, to airway hyper-responsiveness, CLINICAL AND EXPERIMENTAL ALLERGY, , 37, 592-598 (2007)
Transmembrane domain of myelin protein zero can form dimers: Possible implications for myelin construction, BIOCHEMISTRY, , 46, 12164-12173 (2007)
Functional characterization of sequence motifs in the transit peptide of Arabidopsis small subunit of Rubisco, PLANT PHYSIOLOGY, , 140, 466-483 (2006)
A limited universe of membrane protein families and folds, PROTEIN SCIENCE, , 15, 1723-1734 (2006)
Self-association of the transmembrane domain of an anthrax toxin receptor, JOURNAL OF MOLECULAR BIOLOGY, , 360, 145-156 (2006)
Pivotal role of the glycine-rich TM3 helix in gating the MscS mechanosensitive channel, NATURE STRUCTURAL & MOLECULAR BIOLOGY, , 12, 113-119 (2005)
Transmembrane domain helix packing stabilizes integrin aIIb beta 3 in the low affinity state, JOURNAL OF BIOLOGICAL CHEMISTRY, , 280, 7294-7300 (2005)
Transmembrane glycine zippers: Physiological and pathological roles in membrane proteins, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, , 102, 14278-14283 (2005)
2D SOLID STATE NMR SPECTRAL SIMULATION OF 3(10), ALPHA, AND PI-HELICES, JOURNAL OF MAGNETIC RESONANCE, , 168, 187-193 (2004)
A MODEL OF THE CLOSED FORM OF THE NICOTINIC ACETYLCHOLINE RECEPTOR M2 CHANNEL PORE, BIOPHYSICAL JOURNAL, , 87, 792-799 (2004)
Membrane channel structure of Helicobacter pylori vacuolating toxin: Role of multiple GXXXG motifs in cylindrical channels, PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, , 101, 5988-5991 (2004)
SNORKELING PREFERENCES FOSTER AN AMINO ACID COMPOSITION BIAS IN TRANSMEMBRANE HELICES, JOURNAL OF MOLECULAR BIOLOGY, , 339, 471-479 (2004)
The affinity of GXXXG motifs in transmembrane helix-helix interactions is modulated by long-range communication, JOURNAL OF BIOLOGICAL CHEMISTRY, , 279, 16591-16597 (2004)
Dynamical localization and partial-barrier localization in the Paul trap, PHYSICAL REVIEW E, , 61, 5124-5128 (2000)

국내전문학술지

Energy metabolism and whole-exome sequencing-based analysis of Sasang constitution: a pilot study, Integrative Medicine Research, , 6, 165-178 (2017)

일반학술지

PROTEIN-PROTEIN INTERACTION AND BIOLOGICAL NETWORK, BIOPHYSICAL SOCIETY NEWSLETTER, , 13, 3-9 (2008)
RETRIEVING PROTEIN DOMAIN ENCODING DNA SEQUENCES AUTOMATICALLY THROUGH DATABASE CROSS-REFERENCING, BIOINFORMATICS AND BIOSYSTEMS, , 1, 95-98 (2006)

학술회의논문

March2 is required for Xenopus head organizer formation by antagonizing Wnt signaling pathway, Mechanisms of Development, 0, 0, - (2017)
Prediction of post-translational phosphorylation of proteins using multiple kernel learning, The 7th internaltional conference of Korean Society for Bioinformatics, 0, 0, 16-21 (2006)

학회발표

Regulatory network rewiring explains the phenotypic evolution between human and model organism, Wellcome Trust Genome Conference Series Evolutionary Systems Biology, 0, 0, - (2020)
Visible machine learning approach to predict anticancer drug efficacy in cancer patients using organoid models, Wellcome Trust Genome Institute Conference Evolutionary Systems Biology, 0, 0, - (2020)
Identification of cancer type-specific driver mutations using sequence co-evolution analysis, Wellcome Trust Genome Institute Conference Wellcome Trust Genome Institute, 0, 0, - (2020)
Evolution of functional modules and regulatory networks: Understanding genotype-phenotype relationship, Asian Bioinformatics Consortium (ABC) Symposium, 0, 0, - (2019)
A systematic gene-phenotype comparison between human and mouse to find accurate phenologs, The 16th Korea-Japan_China Bioinformatics Symposium, 0, 0, - (2018)
Identification of druggable PPIs using domain-mediated interaction interfaces, 26th Conference on Intelligent Systems for Molecular Biology, 0, 0, - (2018)
Predicting mutational impact of disease-associated variants based on the network of evolutionary coupled residues, 26th Conference on Intelligent Systems for Molecular Biology, 0, 0, - (2018)
Transcriptomic changes in network partners of orthologous genes represent phenotypic differences between species, 26th Conference on Intelligent Systems for Molecular Biology, 0, 0, - (2018)
Identification of cancer essential genes through integration of cell-line specific network, 26th Conference on Intelligent Systems for Molecular Biology, 0, 0, - (2018)
Biological functions rather than individual genes can explain the phenotypic differences observed between human and mouse orthologous genes, 10th Annual RECOMB/ISCB Confernce on Regulatory & Systems Genomics, 0, 0, - (2017)
Identification of biomarkers and prediction of survival based on exome sequencing of the mouse model of aggressive bladder cancer, 10th Annual RECOMB/ISCB Confernce on Regulatory & Systems Genomics, 0, 0, - (2017)
A Golgi protein MON-2 mediates longevity conferred by reduced mitochondrial respiration in C. elegans , ., 0, 0, - (2017)
KIN-4/MAST kinase binds DAF-18/PTEN through its PDZ domain and contributes to the longevity of daf-2/insulin/IGF-1 receptor mutants , ., 0, 0, - (2017)
KIN-4/protein kinase influences insulin/IGF-1 signaling-mediated longevity via interacting with DAF-18/PTEN in C. elegans , ., 0, 0, - (2017)
Predicting the functional impact of protein mutations using coevolutionary signals, INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY 2016, 0, 0, - (2016)
Types of domain mediated interaction explain gentype-phenotype relationships, INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY 2016, 0, 0, - (2016)
Network evolution and phenotype changes between species, INTERNATIONAL CONFERENCE ON SYSTEMS BIOLOGY 2016, 0, 0, - (2016)
Popularity and similarity in network evolution explain the architecture of core/attachemnt in protein complexes, INTERNATIONAL SCHOOL AND CONFERENCE ON NETWORK SCIENCE 2016, 0, 0, - (2016)
Network evolution and understanding human gene-phenotype relationship, INTERNATIONAL SCHOOL AND CONFERENCE ON NETWORK SCIENCE 2016, 0, 0, - (2016)
Phenotype role of domain mediated interactions through community detection on the structural interaction network, INTERNATIONAL SCHOOL AND CONFERENCE ON NETWORK SCIENCE 2016, 0, 0, - (2016)
Identification of transient protein complexes by using intrinsic disorder and network topology, ., 0, 0, - (2015)
Identification of cancer-type-specific modules comprised of cancer-type-specific variants through phenotype similarity between cancer types, ., 0, 0, - (2015)
A comprehensive protein domain analysis to map cancer-type-specific somatic mutations, ., 0, 0, - (2015)
Protein complexes differ in the density and the modularity of protein-protein interactions to achieve, ., 0, 0, - (2015)
Weak linear motif-mediated interactions contribute to the rearrangement of modular architecture in complex protein interaction networks, ., 0, 0, - (2014)
Gene essentiality on model organism explains clinical severity of human genetic disorders, ., 0, 0, - (2014)
Domain exchange between membrane and soluble proteins contributes to expand intercellular communication network, ., 0, 0, - (2014)
Analysis of protein domains and gene essentiality, ., 0, 0, - (2014)
Domain exchange between membrane and soluble proteins contributes to metazoan evolution, ., 0, 0, - (2013)
Improving module identification in protein-protein interaction networks by using interaction strengths, ., 0, 0, - (2013)
Modular architecture of gene essentiality reveals clinical severity of human genetic diseases, ., 0, 0, - (2013)
Network Evolution and Gene Essentiality Changes, ., 0, 0, - (2013)
Fold Space and Function Annotation of Membrane Proteins, ., 0, 0, - (2013)
Analysis of shared structure and function between membrane and water-soluble proteins for drug design, ., 0, 0, - (2012)
Analysis of interaction strengths and global architecture in protein-protein interaction networks, ., 0, 0, - (2012)
Multipath in protein interaction network improved the understanding of the comorbidity of genetic diseases, ., 0, 0, - (2012)
Network medicine to predict drug side effects:Functional diversity of membrane proteins is mediated by dynamic rewiring of protein interactions, ., 0, 0, - (2012)
Global Sequence Homology Detection Using Word Conservation Probability, ., 0, 0, - (2011)
Comparative network analysis reveals the mechanism of gene essentiality changes, ., 0, 0, - (2011)
Evolutionary connections of disease modules implicate in the comorbidity, ., 0, 0, - (2011)
Evolution of domain-linear motif interactions shapes the modular architecture of protein-protein interaction networks, ., 0, 0, - (2011)
Connection patterns in protein-protein interaction network reveal the phenotypic relationships among human diseases, ., 0, 0, - (2011)
E-health for disease prognosis: Connection patterns in protein-protein interaction network reveal phenotype similarity and comorbidity of genetic diseases, ., 0, 0, - (2011)
E-health and network medicine: Network position can identify mitochondrial disease genes, ., 0, 0, - (2011)
Protein Localization as a principal feature of comorbidity, ., 0, 0, - (2011)
Comparative genomics between yeast and mouse reveals the etiology of genetic diseases, ., 0, 0, - (2011)
Network medicine to predict drug side effects: Rewiring of protein-protein interaction network of plasma membrane proteins explains drug side effects, ., 0, 0, - (2011)
Structural property of protein-protein interactions explains functional associations at the molecular and phenotypic levels, ., 0, 0, - (2011)
E-health and drug target discovery: Analysis of fold space of membrane proteins to find the template structures for drug target discovery, ., 0, 0, - (2011)
Membrane proteins share fold space with soluble proteins to expand their functional diversity during evolution, ., 0, 0, - (2011)
Tissue Specific Interactions of Plasma Membrane Proteins as the Mechanism of Functional Diversity, ., 0, 0, - (2010)
Protein conformational changes are derived from the network of evolutionarily coupled residues, ., 0, 0, - (2010)
Systematic analysis of human PDZ domain-ligand interaction network and their localization, ., 0, 0, - (2010)
The implications of protein subcellular localization for disease profiling, ., 0, 0, - (2010)
Systematic analysis of mitochondrial proteins involved in the communication to the cell, ., 0, 0, - (2010)
The important role of protein subcellular localization in disease profiling, ., 0, 0, - (2010)
Understanding the mitochondrial proteins involved in the communication to the cell through network biology, ., 0, 0, - (2010)
Comprehensive analysis of human PDZ domain-ligand interaction network, ., 0, 0, - (2010)
New insight into the fold space of membrane proteins revealed by structural comparison with soluble proteins, ., 0, 0, - (2010)
Tissue specific expression of plasma membrane proteins and their functional diversity, ., 0, 0, - (2010)
Insights into protein flexibility: The relationship between evolutionarily coupled residues and conformational changes, ., 0, 0, - (2010)
The importance of protein subcellular localization for disease profiling, ., 0, 0, - (2010)
Evolutionary analysis of conformational changes in allosteric proteins, ., 0, 0, - (2010)
Evolution of protein dynamics: Role of residue interaction networks in protein allostery, ., 0, 0, - (2009)
Quantitative interaction prediction revealed the genome-wide selectivity preferences of human PDZ domains, ., 0, 0, - (2009)
Identification of functional residues in Major Facilitator Superfamily (MFS) transporters using evolutionary features, ., 0, 0, - (2009)
Identification of eukaryote-specific mitochondrial proteome through data integration and phylogenetic profiling, ., 0, 0, - (2009)
Functional and evolutionary relationship between membrane and soluble proteins, ., 0, 0, - (2009)
Bioinformatic studies of protein sequence, structure, and function, ., 0, 0, - (2009)
Intrinsically unstructured C-terminal regions of transmembrane PDZ ligands play an important role in clustering scaffold proteins, ., 0, 0, - (2009)
Analysis of eukaryote-specific mitochondrial protein networks through data integration and phylogenetic profiling, ., 0, 0, - (2009)
Genome-wide selectivity preferences of human PDZ domain-ligand interactions, ., 0, 0, - (2009)
Identification of eukaryote-specific mitochondrial proteome through data integration and phylogenetic profiling, ., 0, 0, - (2009)
Functional and evolutionary relationship between membrane and soluble proteins, ., 0, 0, - (2009)
Assessing systems properties of human mitochondria through a quantitative proteomics analysis, ., 0, 0, - (2009)
A new systematic approach to identify functions of human extracellular proteins using yeast, ., 0, 0, - (2009)
Rational design of binding determinant specific non-antibody protein scaffolds: EGFR inhibitors with novel mechanism of action, ., 0, 0, - (2009)
Intrinsically unstructured C-terminal regions of transmembrane PDZ ligands play an important role in clustering scaffold proteins, ., 0, 0, - (2009)
Evolutionary conservation in multiple face of protein interaction, ., 0, 0, - (2009)
Protein interface design to generate novel binder proteins, The 6th Proteome Biophysics workshop, 0, 0, - (2008)
Evolutionary conservation in multiple faces of protein interaction, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (2008)
Locally fluctuating ligand-binding residues transfer ligand binding signals to distal sites via co-evolved pathway, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (2008)
Quantitative interation prediction revealed the genome-wide selectivity preferences of human PDZ domains, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (2008)
Large-scale Analysis of Protein Complexes Reveals Evolutionary Conservation in Multiple faces of Protein interaction, The 9th International Congress on Cell Biology, 0, 0, - (2008)
Locally fluctuating ligand-binding residues transfer ligand binding signals to distal sites via co-evolved pathway, ., 0, 0, - (2008)
Quantitative interaction prediction revealed the genome-wide selectivity preferences of human PDZ domains, ., 0, 0, - (2008)
Large-scale Analysis of Protein Complexes Reveals Evolutionary Conservation in Multiple faces of Protein interaction, ., 0, 0, - (2008)
Integrative proteomics analysis of human mitochondrial protein functional network in normal and dysfunctional states, The 22nd symposium of the protein society, 0, 0, - (2008)
Systematic Integration of Proteomics and Bioinformatics Reveals the Evolutionary Modularity of Human Mitochondrial Protein Functional Network., From Bench to Clinic : Mitochondria and Metabolic Diseases, 0, 0, - (2008)
Structural Bioinformatics Studies of Protein-Protein interaction network, 2008 Korean Biophysical Society Meeting, 0, 0, - (2008)
A comparative mitochondrial proteomics of human 143B TK osteosarcoma cells upon mitochondrial DNA depletion using ICAT and LC/MS/MS, 8th International Proteomics Conference, 0, 0, - (2008)
Assessing systems property of human mitochondrial protein functional network by using integrative proteomics and bioinformatics, 8th international Proteomics Conference, 0, 0, - (2008)
Large-scale analysis of protein complexes reveals evolutionary conservation in multiple faces of protein interaction., The 65th KSBMB Annual Meeting in 2008, 0, 0, - (2008)
Assessing systems properties of human protein functional network by an integrated proteomics and bioinformatics approach, The 25th Korean sociey for cell biology symposium, 0, 0, - (2008)
Structure Comparison by use of Geometric Hashing, The 7th Protein Folding School, 0, 0, - (2008)
Prediction of functional residues in major facilitator superfamily transporters using integrated evolutionary features, The Sixth Asia Pacific Bioinformatics Conference 2008, 0, 0, - (2008)
Structural bioinformatics of membrane proteins and protein-protein interactions, The 4th Molecular Computation Initiative Workshop, 0, 0, - (2007)
Bioinformatics approaches of Mitochondrial ion channel discovery, 2nd symposium of Korean society for Mitochondrial Research and Medicine, 0, 0, - (2007)
Discovery of novel mitochondrial membrane proteins by systematic data integration, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Finding amino acid patterns in protein localization, The 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Identification of ligand binding site in eukaryotic translation initiation factor 4A by docking study, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Identification of the functinal network components in tumor derived microvesicles, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Missing puzzles in current proteome researches; the membrane protein functionomics, The 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Reorganizing protein functional network based on the consensus localization prediction, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Specificity prediction of PDZ domain using machine learning technique, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (2007)
Specificity prediction of PDZ domain using kernel based machine learning, IEEE international conference on Bioengineering & Bioinformactics, 0, 0, - (2007)
Prediction of membrane protein structures and functions by using bioinformatics, Protein Structure, Interaction, Stability and Function Workshop, 0, 0, - (2007)
Detecting the ligand selectivity of sub-family proteins by using evolutionary conserved and functionally coevolved residues, European Symposium of the Protein Society, 0, 0, - (2007)
Identification of functional residues in Major Facilitator Superfamily (MFS) transporters using evolutionary information, European Symposium of the Protein Society, 0, 0, - (2007)
Structural Bioinformatics of membrane proteins and protein-protein interactions, The 6th China-Japan-Korea Bioinformatics training course, 0, 0, - (2007)
Specificity prediction of PDZ domain using kernel based machine learning, The fifth aisa pacific bioinformatics conference, 0, 0, - (2007)
Bioinformatics approach to study membrane protein structure and function, Current topics in biomedical sciences, 0, 0, - (2006)
modeling membrane protein structure and function, The 7th international conference of Korean society for Bioinformatics, 0, 0, - (2006)
Modeling structure and function of membrane proteins, 2006 Asia Pacific summer school on computational biology, 0, 0, - (2006)
Internal sequence repeats and structural symmetry in membrane proteins, 50th Biophysical Society Annual Meeting, 0, 0, - (2006)
Structural bioinformatics studies of membrane protein folding and functional mechanism, Membrane Protein Symposium, 0, 0, - (2006)
Membrane protein structure and functional prediction, The 7th Northeastern Asia Symposium on Biotechnology, 0, 0, - (2005)
Membrane protein structure prediction using symmetry information and clustering, The Fifth KIAS Conference on Protein Structure and Function, 0, 0, - (2005)
Structural bioinformatics study of membrane proteins, New Trends in Bio-Science ""International symposium with KSMCB"", 0, 0, - (2005)
Structural bioinformatics study on transmembrane signaling, Annual Meeting of Korean Society for Biochemistry and Molecular Biology, 0, 0, - (2005)
Structural bioinformatics study on transmembrane signaling, Annual Meeting of Korean Society for Biochemistry and Molecular Biology, 0, 0, - (0000)
Membrane protein structure and functional prediction, The 7th Northeastern Asia Symposium on Biotechnology, 0, 0, - (0000)
Structural bioinformatics study of membrane proteins, New Trends in Bio-Science ""International symposium with KSMCB"", 0, 0, - (0000)
Membrane protein structure prediction using symmetry information and clustering, The Fifth KIAS Conference on Protein Structure and Function, 0, 0, - (0000)
Structural bioinformatics studies of membrane protein folding and functional mechanism, Membrane Protein Symposium, 0, 0, - (0000)
Internal sequence repeats and structural symmetry in membrane proteins, 50th Biophysical Society Annual Meeting, 0, 0, - (0000)
Modeling structure and function of membrane proteins, 2006 Asia Pacific summer school on computational biology, 0, 0, - (0000)
modeling membrane protein structure and function, The 7th international conference of Korean society for Bioinformatics, 0, 0, - (0000)
Bioinformatics approach to study membrane protein structure and function, Current topics in biomedical sciences, 0, 0, - (0000)
Specificity prediction of PDZ domain using kernel based machine learning, The fifth aisa pacific bioinformatics conference, 0, 0, - (0000)
Structural Bioinformatics of membrane proteins and protein-protein interactions, The 6th China-Japan-Korea Bioinformatics training course, 0, 0, - (0000)
Detecting the ligand selectivity of sub-family proteins by using evolutionary conserved and functionally coevolved residues, European Symposium of the Protein Society, 0, 0, - (0000)
Identification of functional residues in Major Facilitator Superfamily (MFS) transporters using evolutionary information, European Symposium of the Protein Society, 0, 0, - (0000)
Prediction of membrane protein structures and functions by using bioinformatics, Protein Structure, Interaction, Stability and Function Workshop, 0, 0, - (0000)
Specificity prediction of PDZ domain using kernel based machine learning, IEEE international conference on Bioengineering & Bioinformactics, 0, 0, - (0000)
Discovery of novel mitochondrial membrane proteins by systematic data integration, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Finding amino acid patterns in protein localization, The 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Identification of ligand binding site in eukaryotic translation initiation factor 4A by docking study, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Identification of the functinal network components in tumor derived microvesicles, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Missing puzzles in current proteome researches; the membrane protein functionomics, The 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Reorganizing protein functional network based on the consensus localization prediction, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Specificity prediction of PDZ domain using machine learning technique, 8th International Conference of Korean Society for Bioinformatics, 0, 0, - (0000)
Bioinformatics approaches of Mitochondrial ion channel discovery, 2nd symposium of Korean society for Mitochondrial Research and Medicine, 0, 0, - (0000)
Structural bioinformatics of membrane proteins and protein-protein interactions, The 4th Molecular Computation Initiative Workshop, 0, 0, - (0000)
Prediction of functional residues in major facilitator superfamily transporters using integrated evolutionary features, The Sixth Asia Pacific Bioinformatics Conference 2008, 0, 0, - (0000)
Structure Comparison by use of Geometric Hashing, The 7th Protein Folding School, 0, 0, - (0000)
Assessing systems properties of human protein functional network by an integrated proteomics and bioinformatics approach, The 25th Korean sociey for cell biology symposium, 0, 0, - (0000)
Large-scale analysis of protein complexes reveals evolutionary conservation in multiple faces of protein interaction., The 65th KSBMB Annual Meeting in 2008, 0, 0, - (0000)
A comparative mitochondrial proteomics of human 143B TK osteosarcoma cells upon mitochondrial DNA depletion using ICAT and LC/MS/MS, 8th International Proteomics Conference, 0, 0, - (0000)
Assessing systems property of human mitochondrial protein functional network by using integrative proteomics and bioinformatics, 8th international Proteomics Conference, 0, 0, - (0000)
Structural Bioinformatics Studies of Protein-Protein interaction network, 2008 Korean Biophysical Society Meeting, 0, 0, - (0000)
Systematic Integration of Proteomics and Bioinformatics Reveals the Evolutionary Modularity of Human Mitochondrial Protein Functional Network., From Bench to Clinic : Mitochondria and Metabolic Diseases, 0, 0, - (0000)
Integrative proteomics analysis of human mitochondrial protein functional network in normal and dysfunctional states, The 22nd symposium of the protein society, 0, 0, - (0000)
Large-scale Analysis of Protein Complexes Reveals Evolutionary Conservation in Multiple faces of Protein interaction, The 9th International Congress on Cell Biology, 0, 0, - (0000)
Evolutionary conservation in multiple faces of protein interaction, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (0000)
Locally fluctuating ligand-binding residues transfer ligand binding signals to distal sites via co-evolved pathway, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (0000)
Quantitative interation prediction revealed the genome-wide selectivity preferences of human PDZ domains, 2008 YBRI-KIAS international symposium of protein structure and function, 0, 0, - (0000)
Protein interface design to generate novel binder proteins, The 6th Proteome Biophysics workshop, 0, 0, - (0000)

단행본

From Topology to High Resolution Memebrane Proteins Structures. In Perspectives on Solid State NMR in Biology, Kluwer Academic Publishers, , 김상욱 (2001)

연구실적

세포막 단백질의 조합 구조예측, 포항공과대학교 (2005-2006)
생물학연구정보센터 2005년 연구비, 한국과학재단 (2005-2006)
생물학정보센터 관련기관 운영비 지원금, 국립암센터 (2005-2008)
세포막 단백질의 구조와 기능 예측, 포항공과대학교 (2006-2007)
생물학연구정보센터 특별지원금, 포항공과대학교 (2006-2007)
컴퓨터를 이용한 이스트-투 하이브리드 시스템의 개발, 한국학술진흥재단 (2006-2007)
생물학연구정보센터 2006년도 연구비, 한국과학재단 (2006-2007)
생물학연구정보센터 2007년도 연구비, 한국과학재단 (2007-2008)
생명과학 학술정보 수집 및 메타 데이터베이스 구축, 한국과학기술정보연구원 (2007-2007)
BT분야 E-SCIENCE 보급, 커뮤니티 활성화 및 포털 사이트 구축, 한국과학기술정보연구원 (2007-2007)
바이오인포매틱스 기법을 이용한 미토콘드리아 막단백과 이온채널 발굴 및 기능 연구, 충남대학교 (2007-2008)
연구실안전관리비 적립과제, 한국과학재단 (2007-2015)
BIOWORKS 성과확산 및 동적 바이오정보 모니터링 시스템 구축, 한국과학기술정보연구원 (2008-2008)
인건비풀링과제, 포항공과대학교 (2008-2015)
연구개발과제, 포항공과대학교 (2008-2016)
바이오인포매틱스 기법을 이용한 미토콘드리아 막단백과 이온채널 발굴 및 기능 연구, 충남대학교 (2008-2009)
생물학연구정보센터, 한국과학재단 (2009-2010)
4.2711(08년도) 이월과제-생물학연구정보센터, 한국과학재단 (2009-2010)
ORIENTIA의 기능 유전체 DB구축 및 분석, 서울대학교 산학협력단 (2009-2010)
HOMEODOMAIN 결합 DNA MOTIF의 예측과 REGULATORY NETWORK의 구축, (재)한국과학창의재단 (2009-2009)
바이오인포메틱스 기법을 이용한 질병관련 미토콘드리아 단백질 발굴 및 기능 연구, 충남대학교산학협력단 (2009-2010)
학생인건비통합관리과제, 포항공대산학협력단 (2009-2040)
단백질 발현양의 정밀한 조절 메커니즘 연구(학부생연구프로그램), 포항공과대학교 (2009-2010)
생물학연구정보센터(2010), 재단법인한국연구재단 (2010-2011)
ORIENTIA의 기능 유전체 DB 구축 및 분석, 서울대학교 산학협력단 (2010-2011)
바이오인포메틱스 기법을 이용한 질병관련 미토콘드리아 단백질 발굴 및 기능 연구, 충남대학교산학협력단 (2010-2011)
생물학연구정보센터, 재단법인한국연구재단 (2011-2012)
통신네트워크와 생체회로 융합 연구, 포항공대산학협력단 (2011-2012)
운동에 따른 조직특이적 네트워크이 리모델링 연구(학부생-김성현/생명), 포항공과대학교 (2011-2011)
바이오인포메틱스 기법을 이용한 질병관련 미토콘드리아 단백질 발굴 및 기능 연구, 충남대학교산학협력단 (2011-2012)
생물학연구정보센터, 재단법인한국연구재단 (2012-2013)
생체분자 네트워크 기반 질병 모듈 분석을 통한 질병 유전자 발굴과 공존질환 예측 방법 개발, 재단법인한국연구재단 (2012-2013)
IT-BT 융합 기술 개발을 통한 의료기록 저장, 탐색, 분석 선진화 연구, 포항공과대학교 (2013-2014)
생물학연구정보센터, 재단법인한국연구재단 (2013-2014)
생체분자 네트워크 기반 질병 모듈 분석을 통한 질병 유전자 발굴과 공존질환 예측 방법 개발, 재단법인한국연구재단 (2013-2014)
(김동효-생명)유전자 파트너의 네트워크 위상학적 특성 변화가 미치는 ESSENTIALITY, 포항공과대학교 (2013-2013)
(김상욱)BSRI_융합기술을 통한 생체네트워크구축과 치료기술 개발, 포항공과대학교 (2014-2015)
생물학연구정보센터, 재단법인한국연구재단 (2014-2015)
생체분자 네트워크 기반 질병 모듈 분석을 통한 질병 유전자 발굴과 공존질환 예측 방법 개발, 재단법인한국연구재단 (2014-2015)
4.9605_1단계 1차년도 이월과제, 재단법인한국연구재단 (2014-2015)
R_직접비_10022362_CLUSTER SYSTEM, 포항공과대학교 (2015-2024)
(BRSI-ISP)빅데이터 분석과 네트워크 연구를 위한 다학제간 스터디 포럼, 포항공과대학교 (2015-2016)
생물학연구정보센터, 재단법인한국연구재단 (2015-2016)
[학생연구프로그램_신중한]단백질 네트워크 분석을 통한 인간 질병 표현형의 이해, 포항공과대학교 (2015-2015)
단백질 상호작용 네트워크 모듈분석을 통한 유전자-질병 프로파일 구축, 재단법인한국연구재단 (2015-2016)
미토콘드리아 매개 사상체질 진단을 위한 유전체 분석, 한국한의학연구원 (2015-2015)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 해양수산과학기술진흥원 (2015-2016)
연구개발과제[2015년 신설], 포항공과대학교 (2015-2035)
2015년 기술영향평가대상기술(유전자가위기술)온라인설문조사용역, 한국과학기술기획평가원 (2015-2015)
미토콘드리아 매개 사상체질 진단을 위한 유전체 분석, 한국한의학연구원 (2016-2016)
나고야의정서(ABS)발효의 대응방안을 위한 연구자 인식조사, 한국생명공학연구원 (2016-2016)
S_직접비_김상욱, 포항공과대학교 (2016-2024)
생물학연구정보센터, 재단법인한국연구재단 (2016-2017)
단백질 상호작용 네트워크 모듈분석을 통한 유전자-질병 프로파일 구축, 재단법인한국연구재단 (2016-2017)
4.12360_이월과제, 재단법인한국연구재단 (2016-2017)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 부산대학교 (2016-2017)
나고야의정서 비준 대비 연구자 인식조사, 한국생명공학연구원 (2017-2017)
생물학연구정보센터, 재단법인한국연구재단 (2017-2018)
단백질 상호작용 네트워크 모듈분석을 통한 유전자-질병 프로파일 구축, 재단법인한국연구재단 (2017-2018)
(집담회)IT,BT융합 기술을 통한 의료빅데이터 분석과 질병유전자 발굴, 포항공과대학교 (2017-2018)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2017-2018)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 부산대학교 (2017-2018)
나고야의정서 및 유전자원법 인식도조사, 한국생명공학연구원 (2018-2018)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2018-2018)
생물학연구정보센터, 재단법인한국연구재단 (2018-2018)
생체 네트워크의 링크 교란 정량화를 통한유전자-질병표현형 프로파일의 구축, 재단법인한국연구재단 (2018-2019)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 부산대학교 (2018-2019)
생물학연구정보센터, 재단법인한국연구재단 (2018-2019)
4.15021 이월과제, 재단법인한국연구재단 (2018-2018)
나고야의정서 인식도 조사, 한국생명공학연구원 (2018-2018)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2019-2019)
생체 네트워크의 링크 교란 정량화를 통한유전자-질병표현형 프로파일의 구축, 재단법인한국연구재단 (2019-2020)
생물학연구정보센터, 재단법인한국연구재단 (2019-2020)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 해양수산과학기술진흥원 (2019-2019)
이공계 대학원생 처우 개선 방안 자문안 현장의견 수렴을 위한 설문조사, 과학기술정보통신부 (2019-2019)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2020-2020)
생체 네트워크의 링크 교란 정량화를 통한유전자-질병표현형 프로파일의 구축, 재단법인한국연구재단 (2020-2021)
생물학연구정보센터, 재단법인한국연구재단 (2020-2021)
나고야의정서 인식도 조사, 한국생명공학연구원 (2020-2020)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 해양수산과학기술진흥원 (2020-2020)
차세대 방사광가속기 이용자 수요조사, 한국원자력연구원 (2020-2020)
4.17326 이월과제, 재단법인한국연구재단 (2020-2020)
4.17656 이월과제, 재단법인한국연구재단 (2020-2021)
대전국가혁신클러스터지원사업 사업화지원사업, 아이빔테크놀로지 주식회사 (2020-2020)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2021-2021)
생체 네트워크와 해석 가능한 인공지능을 통한 환자 맞춤형 정밀 의료 플랫폼 구축, 재단법인한국연구재단 (2021-2022)
환경변화에 대응한 오믹스 기반 수산생물 감염성질병 제어기술 개발, 해양수산과학기술진흥원 (2021-2021)
자가 면역질환 환자의 진단 및 치료 바이오 마커 발굴을 위한 생물정보학 연구, 이뮤노바이옴 주식회사 (2021-2022)
AUTISM SPECTRUM DISORDER (ASD) 환자의 진단 바이오마커 및 치료 약물 발굴을 위한 인공지능 모델 기반 생물정보학 연구, 이뮤노바이옴 주식회사 (2022-2023)
인공지능을 이용한 면역질환 환자의 신약개발 프로세스 개선, 이뮤노바이옴 주식회사 (2022-2023)
후성유전학 기반 네트워크 생물학 연구인력양성, 재단법인한국연구재단 (2022-2022)
생체 네트워크와 해석가능한 인공지능을 통한 환자 맞춤형 정밀 의료 플랫폼 구축, 재단법인한국연구재단 (2022-2023)
병원진료표준화를 위한 의료기록 분석 및 테이터 정량화에 대한 타당성 연구, 포항우리병원 (2022-2023)
면역 질환 환자의 PRECISION MEDICINE을 위한 오믹스 데이터 및 기계 학습 모델 기반의 생물정보학 연구, 이뮤노바이옴 주식회사 (2022-2023)
액체생검 기반 암 조기진단 인공지능 모델 및 인공지능 헬스케어 활용 모델 개발 자문, (주)녹십자홀딩스 (2022-2023)
액체생검 기반 암 조기진단 인공지능 모델 및 인공지능 헬스케어 활용 모델 개발 자문, (주)녹십자홀딩스 (2023-2023)
면역질환 환자의 신약개발 프로세스를 위한 인공지능, 이뮤노바이옴 주식회사 (2023-2023)
약물 타겟 및 질병 유전자를 이용한 빅데이터 및 인공지능 모델 기반 치료 약물 발굴의 생물정보학 연구, 이뮤노바이옴 주식회사 (2023-2024)
인공지능 헬스케어 활용 모델 개발 자문, (주)녹십자홀딩스 (2023-2023)

IP

김상욱,김인해,박창욱,이광환, 세포주 대상 유전자 제거 스크리닝에서 도출한 유전자 네트워크 기반 암종 특이적 약물 발굴 모델, 한국, 10-2022-0174921 (2022)
김상욱,정규열,김동효,노명현, 서열 공진화 분석-기반 효소 활성 예측 방법 및 이의 용도, 한국, 10-2023-0121890 (2022)
김상욱,공정호,김인해,박창욱, 네트워크와 기계학습을 이용한 면역항암치료제의 반응성 예측 모델, -, PCT/KR2022/0140 (2022)
김상욱,박창욱,김인해,박민혁, 표적 유전자 특성 기반 약물 임상시험 성공률 예측 기계학습 모델, 한국, 10-2022-0147881 (2022)
김상욱,김인해,박창욱,공정호, 네트워크와 기계학습을 이용한 면역항암치료제의 반응성 예측 모델, 한국, 10-2022-0040238 (2022)
김상욱,김인해,박창욱,공정호, 네트워크에 기반한 머신러닝 기법을 활용하여 암 환자에 대한 ICI 치료 효과와 전체 생존률을 예측할 수 있는 바이오마커의 탐색 장치 및 방법, 한국, 10-2022-0040238 (2022)
김상욱,공정호,박창욱,김인해, 네트워크와 기계학습을 이용한 면역항암치료제의 반응성 예측 모델, 한국, 10-2021-0135020 (2021)
김상욱,황지혜,최윤섭, 약물 표적 막 단백질 안정성 테스트 기술 개발, 한국, 10-2014-0020441 (2013)
김상욱,황지혜,최윤섭, 약물 표적 막 단백질 안정성 테스트 기술 개발, 한국, 10-2014-0020441 (2013)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, 중국, 201080020628.8 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, 중국, 201080020628.8 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, 중국, 2010800206288 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, 일본, 2012-505820 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, 일본, 2012-505820 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, USA, 13/264,365 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, USA, 13/264,365 (2011)
장승기,박지훈,박솔잎,김상욱, CD63단백질 기능 저해를 통한 HCV 감염 치료, -, 61/440,898 (2011)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, -, PCT/KR2010/0023 (2010)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체-바인더 단백질의 합리적 디자인 방법, PCT, PCT/KR2010/0023 (2010)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체 단백질 및 이의 제조 방법, 한국, 10-2010-0034505 (2010)
류성호,최윤섭,정준호,김상욱,조현수,윤수민,김경록,유지호, 표적 특이적 비항체 단백질 및 이의 제조 방법, 한국, 10-2010-0034505 (2010)
류성호,최윤섭,서판길,정준호,김상욱,조현수,윤수민,김경록,유지호, 전자 라이브러리로부터 시뮬레이션을 통해 표적 분자 저해를 위한 최적의 단백질 구조를 검색하는 방법, 한국, 10-2010-0015396 (2010)
최윤섭,류성호,서판길,정준호,김상욱,조현수,윤수민,김경록,유지호, 전자 라이브러리로부터 시뮬레이션을 통해 표적 분자 저해를 위한 최적의 단백질 구조를 검색하는 방법, 한국, 10-2010-0015396 (2010)
류성호,최윤섭,윤수민,서판길,김상욱,정준호, 타겟 특이적 비항체 바인더 단백질의 합리적 디자인 기술, -, 61/169,636 (2009)